Compiling BIND 9 for use in a chroot jail should be a much more
pleasant experience than BIND 8 was. In fact, you don't have to
do anything special; the standard ./configure &&
make should suffice.
Keep in mind that if you want to enable IPv6 support in BIND
(--enable-ipv6) on Linux systems, you need matching
versions of kernel and glibc. If you have kernel 2.2, you need
glibc 2.1, and if you have kernel 2.4, you need glibc 2.2. BIND
is quite picky about this.